JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REC8_chr14_24167080_24185254	0/0	c0009	1644	1	0	1	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	c0010	1644	1	0	0	1	0	0	copy fasta	REC8	chr14	24167080	24185254
RECK_chr9_36031913_36129455	1/1	c0001	2916	217	64	45	77	6	23	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0002	2916	80	4	18	45	4	9	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0003	2916	44	11	7	20	4	2	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0004	2916	21	7	1	13	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0005	2916	14	0	0	14	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0006	2916	5	5	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0007	2916	3	3	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0008	2916	2	0	0	0	0	2	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0009	2916	1	1	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0010	2916	1	0	0	1	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0011	2916	1	0	0	1	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0012	2916	1	1	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0013	2916	1	0	0	1	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	c0014	2916	1	0	1	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECQL4_chr8_144506288_144522833	0/0	c0001	3627	106	27	16	44	6	13	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/1	c0002	3627	89	2	25	40	9	12	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	1/0	c0003	3627	45	0	3	41	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0004	3627	20	12	3	4	1	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0005	3627	13	3	4	4	0	2	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0006	3627	11	11	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0007	3627	11	0	2	4	0	5	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0008	3627	10	1	0	9	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0009	3627	6	0	4	2	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0010	3627	5	0	0	5	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0011	3627	5	5	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0012	3627	5	0	5	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0013	3627	5	0	5	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0014	3627	5	5	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0015	3627	4	4	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0016	3627	4	0	1	2	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0017	3627	4	4	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0018	3627	3	0	2	0	1	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0019	3621	3	1	0	2	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0020	3627	3	0	0	3	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0021	3627	3	3	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0022	3627	2	2	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0023	3627	2	2	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0024	3627	2	0	2	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0025	3627	2	2	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0026	3627	2	0	0	0	0	2	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0027	3627	2	0	2	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0028	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0029	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0030	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0031	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0032	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0033	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0034	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833