JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RECQL4_chr8_144506288_144522833	0/0	c0035	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0036	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0037	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0038	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0039	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0040	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0041	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0042	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0043	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0044	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0045	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0046	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0047	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0048	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0049	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0050	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0051	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0052	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0053	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0054	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0055	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0056	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0057	3627	1	0	0	0	1	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0058	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0059	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0060	3627	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0061	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0062	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0063	3621	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0064	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0065	3627	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0066	3627	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	c0067	3627	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL5_chr17_75621854_75672154	0/1	c0001	2976	154	17	34	72	6	24	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0002	2976	57	39	10	6	0	2	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0003	2976	53	0	10	39	0	4	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0004	2976	41	9	3	23	1	5	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0005	2976	30	12	9	1	5	3	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0006	2976	9	4	0	0	0	5	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0007	2976	5	0	0	5	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	1/0	c0008	2976	4	2	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0009	2976	2	0	0	0	2	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0010	2976	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0011	2976	2	1	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0012	2976	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0013	2976	2	0	0	2	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0014	2976	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0015	2976	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0016	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0017	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154