JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RECQL5_chr17_75621854_75672154	0/0	c0018	2976	1	0	0	0	0	1	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0019	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0020	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0021	2976	1	0	0	0	0	1	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0022	2976	1	0	0	1	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0023	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0024	2976	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0025	2976	1	0	0	0	0	1	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	c0026	2976	1	0	0	1	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL_chr12_21463910_21506635	1/1	c0001	1950	286	64	52	126	13	29	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0002	1950	91	15	6	61	1	8	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0003	1950	8	7	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0004	1950	7	7	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0005	1950	3	3	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0006	1950	2	2	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0007	1950	2	0	0	0	2	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0008	1950	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0009	1950	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0010	1950	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0011	1950	1	0	0	1	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	c0012	1950	1	0	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
REELD1_chr4_146209538_146237267	1/1	c0001	1581	214	22	46	118	7	19	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0002	1581	38	1	9	17	4	7	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0003	1581	26	17	3	4	0	2	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0004	1581	21	5	5	6	2	3	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0005	1581	20	0	1	16	0	3	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0006	1581	14	4	2	3	1	4	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0007	1581	13	0	4	9	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0008	1581	13	0	0	13	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0009	1581	8	8	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0010	1581	6	6	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0011	1581	6	0	1	5	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0012	1581	5	4	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0013	1581	5	5	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0014	1581	5	5	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0015	1581	4	2	2	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0016	1581	4	0	0	4	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0017	1581	3	2	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0018	1581	3	0	0	0	0	3	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0019	1581	3	0	0	3	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0020	1581	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0021	1581	2	1	0	0	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0022	1581	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0023	1581	2	0	0	2	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0024	1581	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0025	1581	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0026	1581	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0027	1581	1	0	0	0	1	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0028	1581	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0029	1581	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267