JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REELD1_chr4_146209538_146237267	0/0	c0030	1581	1	0	0	0	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0031	1581	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0032	1581	1	0	0	0	1	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0033	1581	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0034	1581	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0035	1581	1	0	0	0	0	1	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0036	1581	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	c0037	1581	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REEP1_chr2_86208993_86342626	1/1	c0001	855	190	67	29	68	9	15	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0002	855	114	16	27	50	4	17	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0003	855	5	0	0	5	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0004	855	3	3	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0005	855	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0006	855	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0007	855	1	0	0	1	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0008	855	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0009	855	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	c0010	855	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP2_chr5_138434057_138451965	1/1	c0001	765	430	89	80	198	16	45	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	c0002	765	1	1	0	0	0	0	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	c0003	765	1	0	0	0	0	1	copy fasta	REEP2	chr5	138434057	138451965
REEP3_chr10_63516401_63630128	1/1	c0001	768	280	74	40	128	16	20	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	c0002	768	2	1	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	c0003	768	1	0	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	c0004	768	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP4_chr8_22133020_22146907	1/1	c0001	774	373	93	71	144	15	48	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	c0002	774	14	0	5	8	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	c0003	774	6	1	2	2	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	c0004	774	5	0	2	0	3	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	c0005	774	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	c0006	774	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP5_chr5_112871385_112927227	1/1	c0001	570	336	90	64	130	16	34	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	c0002	570	3	1	2	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	c0003	570	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP6_chr19_1486181_1502927	1/1	c0001	555	287	75	64	101	12	33	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	c0002	555	16	0	1	15	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	c0003	555	11	11	0	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	c0004	555	2	0	0	2	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	c0005	555	1	0	0	0	0	1	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	c0006	555	1	0	1	0	0	0	copy fasta	REEP6	chr19	1486181	1502927
REG1A_chr2_79115488_79128409	1/1	c0001	501	450	96	85	212	13	42	copy fasta	REG1A	chr2	79115488	79128409
REG1A_chr2_79115488_79128409	0/0	c0002	501	1	0	0	0	1	0	copy fasta	REG1A	chr2	79115488	79128409
REG1A_chr2_79115488_79128409	0/0	c0003	501	1	0	1	0	0	0	copy fasta	REG1A	chr2	79115488	79128409
REG1B_chr2_79080023_79092993	1/1	c0001	501	457	92	84	216	16	47	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0002	501	2	2	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0003	501	2	0	0	0	0	2	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0004	501	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0005	501	1	0	0	1	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0006	501	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	c0007	501	1	0	0	1	0	0	copy fasta	REG1B	chr2	79080023	79092993