JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REG1B_chr2_79080023_79092993	0/0	c0008	501	1	0	0	0	0	1	copy fasta	REG1B	chr2	79080023	79092993
REG3A_chr2_79152006_79164753	1/1	c0001	528	422	93	68	203	14	42	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0002	528	4	0	4	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0003	528	2	2	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0004	528	2	0	2	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0005	528	1	1	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0006	528	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0007	528	1	1	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0008	528	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0009	528	1	1	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	c0010	528	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3G_chr2_79020702_79033501	0/1	c0001	528	363	52	60	195	16	39	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	1/0	c0002	528	70	18	8	32	2	9	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0003	528	11	11	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0004	528	9	9	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0005	528	6	3	3	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0006	528	2	0	0	2	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0007	528	1	1	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0008	528	1	0	0	1	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	c0009	528	1	0	1	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG4_chr1_119789017_119816460	1/1	c0001	477	448	87	81	212	18	48	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	c0002	477	10	9	1	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	c0003	477	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	c0004	477	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	c0005	477	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	c0006	477	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
RELA_chr11_65648601_65667916	1/1	c0001	1656	385	85	65	179	18	36	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0002	1656	12	11	1	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0003	1656	2	0	2	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0004	1656	1	0	0	0	0	1	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0005	1656	1	0	0	0	0	1	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0006	1656	1	1	0	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0007	1656	1	1	0	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	c0008	1656	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELB_chr19_44996464_45043192	1/1	c0001	1740	373	91	74	149	12	45	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0002	1740	4	4	0	0	0	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0003	1740	1	0	0	0	0	1	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0004	1740	1	1	0	0	0	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0005	1740	1	0	0	1	0	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0006	1740	1	0	0	1	0	0	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	c0007	1740	1	0	0	1	0	0	copy fasta	RELB	chr19	44996464	45043192
RELCH_chr18_62182255_62315249	1/0	c0001	3651	251	70	40	105	9	26	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0002	3651	24	0	0	24	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/1	c0003	3651	20	0	12	1	1	5	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0004	3651	15	4	1	8	0	2	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0005	3651	11	6	1	0	1	3	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0006	3651	6	3	0	1	1	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0007	3651	3	0	0	0	1	2	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0008	3651	2	2	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0009	3651	1	1	0	0	0	0	copy fasta	RELCH	chr18	62182255	62315249