JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RELCH_chr18_62182255_62315249	0/0	c0010	3651	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0011	3651	1	0	0	0	1	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0012	3651	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0013	3651	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0014	3651	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0015	3651	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	c0016	3651	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELL1_chr4_37605634_37691376	1/1	c0001	816	305	67	63	120	15	38	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0002	816	6	5	1	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0003	816	4	4	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0004	816	2	2	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0005	816	2	0	0	1	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0006	816	2	2	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0007	816	1	0	0	0	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0008	816	1	0	0	0	1	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	c0009	816	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL2_chr5_141631997_141646064	1/0	c0001	912	276	44	50	148	7	26	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/1	c0002	912	81	43	14	7	6	10	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	c0003	912	57	8	13	27	1	8	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	c0004	912	1	0	0	1	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	c0005	912	1	1	0	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	c0006	912	1	0	1	0	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	c0007	912	1	0	0	1	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELN_chr7_103466789_103994658	1/1	c0001	10383	16	4	6	4	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0002	10383	14	1	2	10	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0003	10383	12	2	2	8	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0004	10383	9	0	0	8	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0005	10383	9	7	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0006	10383	8	1	1	4	0	2	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0007	10383	7	0	2	5	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0008	10383	5	2	1	1	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0009	10383	4	0	2	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0010	10383	3	2	0	0	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0011	10383	3	1	2	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0012	10383	3	0	0	3	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0013	10383	3	3	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0014	10383	3	0	0	3	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0015	10383	3	0	1	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0016	10383	3	0	0	3	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0017	10383	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0018	10383	2	0	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0019	10383	2	0	2	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0020	10383	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0021	10383	2	0	0	0	0	2	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0022	10383	2	0	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0023	10383	2	0	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0024	10383	2	1	1	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0025	10383	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0026	10383	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0027	10383	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658