JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RELN_chr7_103466789_103994658	0/0	c0078	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0079	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0080	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0081	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0082	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	c0083	10383	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELT_chr11_73371399_73402474	1/1	c0001	1293	262	54	48	109	16	33	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0002	1293	27	27	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0003	1293	12	3	3	2	1	3	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0004	1293	8	0	0	8	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0005	1293	6	0	0	6	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0006	1293	6	6	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0007	1293	2	0	0	2	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0008	1293	2	2	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0009	1293	2	0	0	2	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0010	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0011	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0012	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0013	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0014	1293	1	0	1	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0015	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0016	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0017	1293	1	0	1	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0018	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0019	1293	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0020	1293	1	0	1	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0021	1293	1	0	0	0	1	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	c0022	1293	1	0	0	1	0	0	copy fasta	RELT	chr11	73371399	73402474
REL_chr2_60876574_60936612	1/1	c0001	1764	263	65	67	88	16	25	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	c0002	1764	6	5	1	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	c0003	1764	5	5	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	c0004	1764	1	1	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	c0005	1764	1	0	0	0	0	1	copy fasta	REL	chr2	60876574	60936612
REM1_chr20_31470288_31489895	1/0	c0001	897	179	13	50	81	12	22	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/1	c0002	897	101	62	22	5	5	6	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0003	897	50	6	6	29	1	8	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0004	897	3	0	0	3	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0005	897	2	0	0	2	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0006	897	2	0	0	2	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0007	897	1	0	0	0	0	1	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0008	897	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0009	897	1	0	0	0	0	1	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0010	897	1	0	0	1	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0011	897	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0012	897	1	0	0	1	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	c0013	897	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM2_chr14_22878222_22892678	1/1	c0001	1023	334	81	60	145	7	39	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0002	1023	35	14	8	9	1	3	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0003	1023	14	0	13	1	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0004	1023	2	2	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678