JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REM2_chr14_22878222_22892678	0/0	c0005	1023	2	0	0	2	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0006	1023	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0007	1023	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0008	1023	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0009	1023	1	0	0	1	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	c0010	1023	1	0	1	0	0	0	copy fasta	REM2	chr14	22878222	22892678
RENBP_chrX_153930269_153949643	1/1	c0001	1284	226	45	43	100	9	27	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0002	1284	10	1	3	6	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0003	1284	9	8	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0004	1284	9	9	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0005	1284	7	4	0	3	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0006	1285	6	0	1	5	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0007	1285	6	1	0	4	0	1	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0008	1284	5	5	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0009	1284	4	4	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0010	1282	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0011	1282	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0012	1288	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0013	1284	1	0	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0014	1284	1	1	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0015	1283	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0016	1284	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0017	1284	1	0	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0018	1285	1	0	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0019	1308	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0020	1285	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0021	1291	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0022	1288	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0023	1285	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	c0024	1284	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
REN_chr1_204149819_204171337	1/1	c0001	1221	360	59	62	186	10	41	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0002	1221	50	21	13	10	2	4	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0003	1221	7	7	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0004	1221	5	4	1	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0005	1221	2	2	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0006	1221	1	0	0	0	0	1	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0010	1221	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0011	1240	1	0	0	1	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0012	1221	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	c0013	1221	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REP15_chr12_27691447_27702596	0/0	c0001	711	241	59	50	104	9	19	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/1	c0002	711	124	14	8	85	1	15	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	c0003	711	46	0	12	24	4	6	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	c0004	711	14	11	3	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	1/0	c0005	711	8	6	1	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	c0006	711	7	0	4	3	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	c0007	711	1	1	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596