JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REP15_chr12_27691447_27702596	0/0	c0008	711	1	1	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REPIN1_chr7_150363822_150379039	1/0	c0001	1875	201	40	54	65	15	26	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/1	c0002	1875	105	2	17	71	3	11	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0003	1863	32	13	3	14	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0004	1863	24	17	2	3	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0005	1875	9	9	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0006	1875	6	0	0	4	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0007	1875	3	3	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0008	1863	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0009	1875	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0010	1863	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0011	1875	2	0	0	2	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0012	1875	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0013	1887	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0014	1863	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0015	1875	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0016	1875	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0017	1875	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0018	1875	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0019	1875	1	1	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0020	1875	1	0	0	0	0	1	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0021	1875	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	c0022	1875	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPS1_chr6_138898493_138993253	1/1	c0001	2391	266	46	52	122	12	32	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0002	2391	80	26	1	50	0	3	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0003	2391	28	14	3	10	0	1	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0004	2391	3	2	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0005	2391	2	2	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0006	2391	2	1	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0007	2391	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0008	2391	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0009	2391	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0010	2391	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0011	2391	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0012	2391	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0013	2391	1	1	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0014	2391	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	c0015	2391	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS2_chrX_16941658_17158272	1/1	c0001	1983	157	37	25	60	7	26	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0002	1982	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0003	1983	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0004	1984	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0005	1981	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0006	1984	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0007	1984	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0008	1984	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0009	1983	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	c0010	1983	1	1	0	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
RER1_chr1_2386841_2410436	1/1	c0001	591	352	81	72	135	18	44	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	c0002	591	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436