JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASNSD1_chr2_189656459_189675831	0/1	c0001	1932	254	52	56	101	10	34	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0002	1932	67	34	8	23	0	2	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	1/0	c0003	1932	5	4	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0004	1932	4	3	1	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0005	1932	3	0	0	3	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0006	1932	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0007	1932	1	0	1	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0008	1932	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0009	1932	1	0	0	1	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0010	1932	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0011	1932	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	c0012	1932	1	1	0	0	0	0	copy fasta	ASNSD1	chr2	189656459	189675831
ASNS_chr7_97846677_97877408	0/0	c0001	1686	372	84	53	188	12	35	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	1/0	c0002	1686	39	2	13	15	6	2	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/1	c0003	1686	6	0	5	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0004	1686	5	2	1	1	0	1	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0005	1686	5	5	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0006	1686	3	0	0	3	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0007	1686	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0008	1686	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0009	1686	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0010	1686	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0011	1686	1	0	0	1	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	c0012	1686	1	1	0	0	0	0	copy fasta	ASNS	chr7	97846677	97877408
ASPA_chr17_3470997_3508405	1/1	c0001	942	370	67	66	188	11	36	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	c0002	942	69	26	13	11	5	14	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	c0003	942	7	0	5	2	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	c0004	942	3	3	0	0	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPA_chr17_3470997_3508405	0/0	c0005	942	1	0	0	1	0	0	copy fasta	ASPA	chr17	3470997	3508405
ASPDH_chr19_50506603_50518913	0/1	c0001	852	241	71	54	81	8	26	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	1/0	c0002	852	86	3	23	40	4	15	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0003	852	32	7	1	23	0	1	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0004	852	6	6	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0005	852	1	0	0	0	1	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0006	852	1	0	1	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0007	852	1	1	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0008	852	1	1	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0009	852	1	0	0	0	1	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0010	852	1	0	1	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPDH_chr19_50506603_50518913	0/0	c0011	852	1	1	0	0	0	0	copy fasta	ASPDH	chr19	50506603	50518913
ASPG_chr14_104080700_104120582	1/0	c0001	1722	138	16	43	49	10	19	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/1	c0002	1722	85	12	15	45	0	12	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0003	1722	57	31	10	8	1	7	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0004	1722	48	5	8	27	4	4	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0005	1722	6	6	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0006	1722	5	2	1	1	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0007	1722	5	5	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0008	1722	3	2	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0009	1722	2	2	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0010	1722	2	2	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582