JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RER1_chr1_2386841_2410436	0/0	c0003	591	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RERE_chr1_8347404_8822640	0/0	c0001	4701	61	11	8	30	4	8	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0002	4701	51	19	12	8	3	9	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	1/1	c0003	4701	24	5	5	7	1	4	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0004	4701	16	8	3	1	0	4	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0005	4701	8	8	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0006	4695	7	0	1	6	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0007	4701	6	0	0	4	1	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0008	4707	4	4	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0009	4701	3	1	2	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0010	4701	3	3	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0011	4701	3	3	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0012	4701	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0013	4695	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0014	4701	1	0	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0015	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0016	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0017	4701	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0018	4701	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0019	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0020	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0021	4701	1	0	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0022	4701	1	0	0	0	1	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0023	4701	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0024	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0025	4701	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0026	4695	1	0	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	c0027	4695	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERGL_chr12_18075869_18095193	1/1	c0001	615	369	83	64	172	15	33	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	c0002	615	26	8	9	1	1	7	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	c0003	615	5	4	1	0	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	c0004	615	1	1	0	0	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	c0005	615	1	0	0	1	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERG_chr12_15102783_15226417	1/0	c0001	600	228	76	37	89	6	19	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/1	c0002	600	68	6	8	37	3	13	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	c0003	600	2	0	1	0	1	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	c0004	600	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	c0005	600	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RESF1_chr12_31954415_31998107	0/0	c0001	5244	65	0	11	41	4	9	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0002	5244	50	4	9	24	3	10	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/1	c0003	5244	45	15	11	11	3	4	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0004	5244	42	10	8	20	1	3	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	1/0	c0005	5244	35	0	2	30	0	2	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0006	5244	34	11	8	6	3	6	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0007	5244	27	1	9	15	1	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0008	5244	24	0	4	20	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0009	5244	20	0	1	19	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0010	5244	14	14	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0011	5244	13	1	7	1	3	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0012	5244	10	8	2	0	0	0	copy fasta	RESF1	chr12	31954415	31998107