JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RESF1_chr12_31954415_31998107	0/0	c0013	5244	9	0	0	9	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0014	5244	8	0	1	7	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0015	5244	6	6	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0016	5244	6	6	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0017	5244	4	0	0	0	0	4	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0018	5244	4	4	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0019	5244	4	4	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0020	5244	3	0	0	3	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0021	5244	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0022	5244	2	2	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0023	5244	2	2	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0024	5244	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0025	5244	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0026	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0027	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0028	5244	1	0	1	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0029	5244	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0030	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0031	5244	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0032	5244	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0033	5244	1	0	1	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0034	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0035	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0036	5244	1	0	1	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0037	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0038	5244	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0039	5244	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0040	5244	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0041	5244	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0042	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0043	5244	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	c0044	5244	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESP18_chr2_219322407_219338177	1/1	c0001	687	226	2	52	136	10	24	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0002	687	78	35	21	10	4	8	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0003	687	65	41	6	7	2	9	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0004	687	38	11	0	23	0	4	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0005	687	5	5	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0006	687	2	0	0	0	0	2	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0007	687	1	0	0	1	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0008	687	1	0	0	1	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0009	687	1	0	0	0	0	1	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0010	687	1	0	1	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0011	687	1	1	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	c0012	670	1	1	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
REST_chr4_56902900_56940844	1/1	c0001	3294	149	33	32	48	6	28	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0002	3294	130	26	18	74	1	11	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0003	3294	67	13	16	37	0	1	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0004	3246	29	7	5	13	2	2	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0005	3294	5	0	0	5	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0006	3294	3	0	0	3	0	0	copy fasta	REST	chr4	56902900	56940844