JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REST_chr4_56902900_56940844	0/0	c0007	3294	3	0	1	0	2	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0008	3246	3	3	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0009	3294	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0010	3294	2	0	2	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0011	3294	2	0	0	2	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0012	3294	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0013	3294	2	0	1	0	1	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0014	3294	1	0	0	0	0	1	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0015	3294	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0016	3294	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0017	3294	1	0	1	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0018	3294	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0019	3294	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0020	3294	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0021	3294	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	c0022	3294	1	0	0	0	0	1	copy fasta	REST	chr4	56902900	56940844
RETNLB_chr3_108750638_108762410	1/0	c0001	336	360	61	59	202	10	27	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	c0002	336	48	11	11	7	2	17	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	c0003	336	24	21	3	0	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/1	c0004	344	19	5	3	0	4	6	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	c0005	336	1	0	0	1	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETN_chr19_7664049_7675455	1/1	c0001	327	456	97	82	207	18	50	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	c0002	327	1	1	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	c0003	327	1	0	0	1	0	0	copy fasta	RETN	chr19	7664049	7675455
RETREG1_chr5_16468053_16621997	0/1	c0001	1494	158	38	30	64	9	16	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	1/0	c0002	1494	92	15	15	42	1	18	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0003	1494	18	16	2	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0004	1494	14	12	1	0	0	1	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0005	1494	4	3	1	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0006	1494	2	1	1	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0007	1494	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0008	1494	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0009	1494	1	0	0	1	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0010	1494	1	0	0	0	0	1	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0011	1494	1	0	0	1	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	c0012	1494	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG2_chr2_219173275_219190475	0/1	c0001	1632	135	27	19	61	8	19	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	1/0	c0002	1632	96	39	14	22	3	17	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0003	1632	94	2	18	70	1	3	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0004	1632	54	1	7	37	4	5	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0005	1632	24	18	2	3	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0006	1632	4	0	3	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0007	1632	4	0	4	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0008	1632	3	0	0	3	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0009	1638	3	3	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0010	1632	3	3	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0011	1632	3	0	2	0	0	1	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0012	1632	2	0	0	2	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0013	1632	1	0	1	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0014	1632	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475