JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RETREG2_chr2_219173275_219190475	0/0	c0015	1632	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0016	1632	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	c0017	1632	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG3_chr17_42574515_42614374	1/1	c0001	1401	351	88	72	134	11	44	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0002	1401	3	0	0	3	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0003	1401	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0004	1401	1	0	0	0	1	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0005	1401	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0006	1401	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0007	1401	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	c0008	1401	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETSAT_chr2_85336955_85359528	1/1	c0001	1833	334	84	64	127	14	43	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0002	1833	20	0	3	17	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0003	1833	4	0	0	4	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0004	1833	3	0	0	3	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0005	1833	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0006	1833	2	0	0	2	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0007	1833	2	1	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0008	1833	2	0	0	0	2	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0009	1833	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0010	1833	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0011	1833	1	0	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0012	1833	1	0	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0013	1833	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0014	1833	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0015	1833	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0016	1833	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0017	1833	1	0	0	0	0	1	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0018	1833	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0019	1833	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0020	1833	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	c0021	1833	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RET_chr10_43072069_43135351	0/1	c0001	3345	153	59	24	54	3	12	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0002	3345	70	0	14	48	0	8	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0003	3345	40	12	9	12	2	5	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0004	3345	23	1	9	7	1	5	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0005	3345	20	8	5	0	5	2	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0006	3345	13	1	4	2	3	3	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0007	3345	13	4	2	6	1	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0008	3345	6	0	0	6	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0009	3345	5	1	1	0	0	3	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0010	3345	4	0	0	4	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0011	3345	3	0	0	3	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0012	3345	3	1	1	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0013	3345	2	0	0	2	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0014	3345	2	1	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0015	3345	2	0	0	0	2	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0016	3345	2	1	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	1/0	c0017	3345	1	0	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0018	3345	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351