JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RET_chr10_43072069_43135351	0/0	c0019	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0020	3345	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0021	3345	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0022	3345	1	0	0	0	1	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0023	3345	1	0	0	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0024	3345	1	0	0	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0025	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0026	3345	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0027	3345	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0028	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0029	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0030	3345	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0031	3345	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0032	3345	1	0	0	0	0	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0033	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0034	3345	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0035	3345	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0036	3345	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	c0037	3345	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
REV1_chr2_99395477_99495017	0/0	c0001	3756	97	17	29	44	2	5	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	1/1	c0002	3756	94	20	17	44	1	10	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0003	3756	62	23	15	12	4	8	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0004	3756	39	21	2	5	2	9	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0005	3756	10	0	10	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0006	3756	3	3	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0007	3756	3	0	0	3	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0008	3756	2	0	0	2	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0009	3756	2	0	0	2	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0010	3756	1	0	1	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0011	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0012	3756	1	0	0	1	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0013	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0014	3756	1	0	1	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0015	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0016	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0017	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0018	3756	1	0	0	0	1	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0019	3738	1	0	0	1	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0020	3756	1	0	1	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	c0021	3756	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV3L_chr6_111294033_111488218	1/0	c0001	9393	95	17	10	52	4	11	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0002	9393	93	8	27	43	3	12	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0003	9393	12	11	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0004	9393	10	0	5	4	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/1	c0005	9393	10	1	7	0	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0006	9393	9	9	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0007	9393	9	4	4	0	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0008	9393	9	1	5	0	1	2	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0009	9393	7	5	2	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0010	9393	4	4	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218