JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REV3L_chr6_111294033_111488218	0/0	c0011	9393	4	0	2	0	2	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0012	9393	3	0	0	0	0	3	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0013	9393	3	3	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0014	9393	2	0	0	0	0	2	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0015	9393	2	0	0	2	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0016	9393	2	2	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0017	9393	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0018	9393	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0019	9393	1	0	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0020	9393	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0021	9393	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0022	9393	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0023	9393	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0024	9393	1	0	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0025	9393	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0026	9393	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0027	9393	1	0	0	0	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0028	9393	1	0	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0029	9393	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	c0030	9393	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REX1BD_chr19_18583798_18597337	1/1	c0001	606	408	84	73	194	10	45	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0002	606	6	6	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0003	606	3	0	0	3	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0004	606	2	2	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0005	606	1	1	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0006	606	1	0	0	1	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0007	606	1	1	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0008	606	1	0	0	0	0	1	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	c0009	73	1	0	1	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REXO1_chr19_1810248_1853483	0/0	c0001	3666	91	11	26	36	9	9	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	1/1	c0002	3666	70	13	12	31	4	8	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0003	3663	47	1	14	30	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0004	3663	25	0	3	15	0	7	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0005	3666	13	1	1	10	1	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0006	3666	12	4	0	7	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0007	3666	12	11	0	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0008	3666	10	6	1	1	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0009	3666	7	0	0	7	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0010	3666	7	4	0	1	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0011	3666	5	5	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0012	3666	5	1	0	3	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0013	3666	4	4	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0014	3666	4	0	0	4	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0015	3669	4	3	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0016	3666	4	0	0	4	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0017	3654	3	3	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0018	3669	3	3	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0019	3669	3	3	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0020	3669	3	3	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0021	3666	2	2	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483