JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REXO1_chr19_1810248_1853483	0/0	c0022	3663	2	1	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0023	3666	2	2	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0024	3672	2	0	2	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0025	3666	2	0	0	0	2	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0026	3663	2	0	2	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0027	3666	2	0	0	2	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0028	3666	2	0	1	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0029	3663	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0030	3669	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0031	3663	1	0	0	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0032	3663	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0033	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0034	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0035	3666	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0036	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0037	3663	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0038	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0039	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0040	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0041	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0042	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0043	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0044	3669	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0045	3669	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0046	3678	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0047	3666	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0048	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0049	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0050	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0051	3663	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0052	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0053	3663	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0054	3666	1	0	0	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0055	3666	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0056	3666	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0057	3666	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0058	3666	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0059	3669	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	c0060	3678	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO2_chr11_114434467_114455279	1/1	c0001	714	430	89	80	205	14	40	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	c0002	714	4	4	0	0	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	c0003	714	2	2	0	0	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	c0004	714	1	1	0	0	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	c0005	714	1	0	0	1	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO4_chr9_133401062_133423010	1/0	c0001	1269	294	67	42	149	11	24	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0002	1269	103	11	31	42	3	16	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0003	1269	14	14	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0004	1269	9	0	2	5	0	2	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0005	1269	2	2	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0006	1269	2	0	0	0	2	0	copy fasta	REXO4	chr9	133401062	133423010