JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
REXO4_chr9_133401062_133423010	0/0	c0007	1269	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/1	c0008	1269	1	0	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0009	1269	1	0	1	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	c0010	1269	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO5_chr16_20801527_20854665	0/0	c0001	2325	299	60	49	144	15	31	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	1/1	c0002	2325	64	25	8	23	1	5	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0003	2325	4	0	0	4	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0004	2325	1	0	1	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0005	2325	1	1	0	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0006	2325	1	0	1	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0007	2325	1	0	1	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	c0008	2325	1	0	0	1	0	0	copy fasta	REXO5	chr16	20801527	20854665
RFC1_chr4_39282456_39371362	1/0	c0001	3444	102	41	16	31	4	9	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/1	c0002	3444	95	2	27	50	4	11	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0003	3444	32	2	5	20	0	5	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0004	3444	26	22	4	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0005	3444	6	6	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0006	3444	5	5	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0007	3444	3	0	0	2	0	1	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0008	3444	2	2	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0009	3444	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0010	3444	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0011	3444	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0012	3444	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	c0013	3434	1	0	0	1	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC2_chr7_74226502_74259399	1/1	c0001	1065	317	86	63	124	13	29	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0002	1065	2	1	0	0	0	1	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0003	1065	2	0	2	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0005	1065	1	0	0	0	1	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	c0008	1065	1	0	1	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC3_chr13_33813149_33842500	1/1	c0001	1071	406	86	70	203	10	35	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	c0002	1071	5	3	0	1	0	1	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	c0003	1071	3	0	0	3	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	c0004	1071	1	1	0	0	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC3_chr13_33813149_33842500	0/0	c0005	1071	1	0	0	1	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC4_chr3_186784900_186811482	0/0	c0001	1092	224	40	39	110	11	24	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	1/1	c0002	1092	198	48	32	91	7	18	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	c0003	1092	4	0	0	4	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	c0004	1092	3	3	0	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	c0005	1092	1	0	1	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	c0006	1092	1	0	0	1	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	c0007	1092	1	1	0	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC5_chr12_118011703_118037234	1/1	c0001	1023	400	71	67	200	18	42	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	c0002	1023	35	27	7	0	0	1	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	c0003	1023	1	0	0	1	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	c0004	1023	1	0	0	1	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	c0005	1023	1	0	0	0	0	1	copy fasta	RFC5	chr12	118011703	118037234