JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFESD_chr5_95641777_95663082	1/1	c0001	633	387	81	72	175	17	40	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	c0002	633	17	6	4	0	1	6	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	c0003	633	3	0	0	3	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	c0004	633	3	3	0	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFFL_chr17_35000990_35068707	1/1	c0001	1092	351	79	59	159	12	40	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	c0002	1092	11	4	0	7	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	c0003	1092	5	4	1	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	c0004	1092	2	2	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	c0005	1092	2	0	0	2	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	c0006	1092	1	1	0	0	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFK_chr9_76380526_76399426	1/1	c0001	468	373	89	61	175	15	31	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0002	468	25	0	11	0	3	11	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0003	468	4	4	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0004	468	3	0	0	3	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0005	468	1	0	0	1	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0006	468	1	0	0	1	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	c0007	468	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFLNA_chr12_124290093_124321024	1/1	c0001	651	211	26	48	92	12	31	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0002	651	142	31	23	74	1	13	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0003	651	17	17	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0004	651	7	7	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0005	651	6	4	1	0	1	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0006	651	3	3	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0007	651	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	c0008	651	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFNG_chr17_82042902_82056811	0/0	c0001	996	216	50	53	77	11	25	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	1/1	c0002	996	210	21	27	132	5	23	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0003	996	7	7	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0004	996	7	2	4	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0005	996	7	6	1	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0006	996	4	4	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0007	996	3	1	0	0	2	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0008	996	2	0	0	1	0	1	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0009	996	2	2	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0010	978	1	0	0	0	0	1	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0011	996	1	0	1	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0012	996	1	0	0	1	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	c0013	996	1	1	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFPL1_chr22_29433583_29447455	1/0	c0001	954	288	42	41	167	6	31	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/1	c0002	951	82	3	23	30	11	14	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0003	954	31	16	5	6	1	3	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0004	951	13	8	3	2	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0005	954	13	13	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0006	954	3	3	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0007	954	3	0	0	2	0	1	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0008	954	3	3	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0009	954	3	2	1	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0010	954	2	1	1	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0011	954	1	0	0	1	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	c0012	954	1	1	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455