JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFPL1_chr22_29433583_29447455	0/0	c0013	954	1	0	0	0	0	1	copy fasta	RFPL1	chr22	29433583	29447455
RFPL2_chr22_32185438_32210073	1/1	c0001	1137	206	9	36	130	6	23	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0002	1137	72	28	22	6	6	10	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0003	1137	46	11	6	21	1	7	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0004	1137	20	8	9	2	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0005	1137	17	15	2	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0006	1137	14	12	0	1	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0007	1137	5	5	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0008	1137	3	3	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0009	1137	2	0	0	0	0	2	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0010	1137	2	2	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0011	1137	1	0	0	0	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0012	1137	1	0	0	0	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0013	1137	1	0	0	0	1	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0014	1137	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0015	1137	1	0	1	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0016	1137	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	c0017	1137	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL3_chr22_32352867_32366161	1/0	c0001	954	170	12	42	89	6	20	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0002	954	98	44	23	7	10	14	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0003	954	93	2	5	78	0	8	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/1	c0004	954	27	3	9	9	0	5	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0005	954	11	10	1	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0006	954	7	5	2	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0007	954	5	5	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0008	954	4	2	1	0	0	1	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0009	954	3	0	1	0	2	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0010	954	1	1	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0011	954	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0012	954	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0013	954	1	1	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0014	954	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	c0015	954	1	1	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL4AL1_chr19_55764118_55778420	0/0	c0000	0	1	0	0	0	1	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0001	864	117	3	17	69	5	23	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0002	864	114	8	31	62	6	7	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0003	864	70	57	7	4	0	2	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0004	864	40	1	5	32	1	1	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0005	864	31	5	14	5	2	5	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	1/0	c0006	864	30	0	0	29	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0007	864	27	7	0	17	0	3	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0008	864	9	5	0	4	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0009	864	5	0	0	4	0	1	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0010	864	4	4	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0011	864	4	1	1	2	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0012	864	3	0	0	3	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0013	864	3	0	0	0	0	3	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0014	864	2	0	0	2	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0015	864	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0016	864	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420