JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASPG_chr14_104080700_104120582	0/0	c0011	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0012	1722	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0013	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0014	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0015	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0016	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0017	1722	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0018	1722	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0019	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0020	1722	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0021	1722	1	0	0	0	0	1	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0022	1722	1	0	1	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0023	1722	1	0	0	1	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0024	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0025	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0026	1722	1	1	0	0	0	0	copy fasta	ASPG	chr14	104080700	104120582
ASPG_chr14_104080700_104120582	0/0	c0027	1722	1	0	0	0	1	0	copy fasta	ASPG	chr14	104080700	104120582
ASPHD1_chr16_29895488_29911056	1/1	c0001	1173	318	73	44	150	8	41	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0002	1176	59	10	24	12	6	7	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0003	1173	7	0	0	7	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0004	1173	4	4	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0005	1173	2	0	0	2	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0006	1173	2	0	0	0	2	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD1_chr16_29895488_29911056	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	ASPHD1	chr16	29895488	29911056
ASPHD2_chr22_26424260_26450015	1/1	c0001	1110	389	79	71	188	12	37	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0002	1110	23	6	6	9	1	1	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0003	1110	7	0	2	0	3	2	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0004	1110	3	0	0	3	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0005	1110	2	0	0	2	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0006	1110	1	0	1	0	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0008	1110	1	1	0	0	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPHD2_chr22_26424260_26450015	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	ASPHD2	chr22	26424260	26450015
ASPH_chr8_61495556_61719592	1/0	c0001	2277	199	58	49	68	3	20	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0002	2277	41	7	8	22	1	3	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0003	2277	3	3	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0004	2277	2	0	0	2	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0005	2277	2	0	0	1	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0006	2277	2	2	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/1	c0007	2277	1	0	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0008	2277	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0009	2277	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0010	2277	1	0	0	1	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0012	2277	1	0	0	0	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0013	2277	1	1	0	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0014	2277	1	0	0	0	0	1	copy fasta	ASPH	chr8	61495556	61719592
ASPH_chr8_61495556_61719592	0/0	c0015	2277	1	0	1	0	0	0	copy fasta	ASPH	chr8	61495556	61719592
ASPM_chr1_197079127_197151669	0/0	c0001	10434	64	2	14	41	1	6	copy fasta	ASPM	chr1	197079127	197151669