JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFPL4AL1_chr19_55764118_55778420	0/0	c0017	10865	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0018	20873	1	0	1	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0019	10863	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0020	10864	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0021	10865	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0022	864	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0023	864	1	0	0	0	1	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0024	864	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0025	864	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0026	10865	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0027	10865	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0028	10865	1	0	0	0	0	1	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0029	402	1	0	1	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0030	864	1	0	1	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	c0031	864	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4A_chr19_55754097_55768421	0/0	c0000	0	5	0	0	2	0	3	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/1	c0001	864	191	32	26	98	8	26	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	1/0	c0002	864	121	4	24	81	3	8	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0003	864	31	7	14	3	3	4	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0004	864	28	0	0	28	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0005	864	17	9	5	0	3	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0006	864	15	2	0	8	0	5	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0007	864	15	11	1	1	1	1	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0008	864	7	7	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0009	864	6	5	1	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0010	864	6	0	5	0	0	1	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0011	864	4	4	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0012	864	3	1	2	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0013	864	3	3	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0014	864	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0015	864	1	0	1	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0016	864	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0017	864	1	0	1	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0018	864	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0019	864	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0020	864	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0021	864	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0022	864	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	c0023	864	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4B_chr6_112342330_112356294	1/1	c0001	792	403	77	73	200	14	37	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	c0002	792	52	19	13	9	2	9	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	c0003	792	2	2	0	0	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	c0004	792	1	0	0	1	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFT1_chr3_53083483_53135435	1/1	c0001	1626	168	62	29	43	7	25	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0002	1626	131	10	36	64	5	16	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0003	1626	18	17	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0004	1626	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0005	1626	1	0	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0006	1626	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0007	1520	1	0	0	0	0	1	copy fasta	RFT1	chr3	53083483	53135435