JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFT1_chr3_53083483_53135435	0/0	c0008	1626	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0009	1626	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	c0010	1626	1	0	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFTN1_chr3_16310845_16518699	1/1	c0001	1737	104	16	23	50	1	12	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0002	1737	91	8	23	48	3	9	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0003	1737	50	39	8	0	2	1	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0004	1737	5	0	1	1	1	2	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0005	1737	5	0	0	5	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0006	1737	4	0	0	4	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0007	1737	2	1	0	0	1	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0009	1737	1	1	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0010	1737	1	0	0	1	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0011	1737	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0012	1737	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0013	1737	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	c0014	1737	1	0	0	1	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN2_chr2_197563224_197680587	0/1	c0001	1506	200	69	33	80	6	11	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	1/0	c0002	1506	104	10	25	56	3	9	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0003	1506	2	0	2	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0004	1506	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0005	1506	1	0	0	0	1	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0006	1506	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0008	1506	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	c0009	1506	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFWD3_chr16_74616399_74671877	0/0	c0001	2325	149	40	21	71	10	7	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0002	2325	105	20	11	59	0	15	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	1/1	c0003	2325	92	17	21	43	3	6	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0004	2325	38	6	15	10	2	5	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0005	2325	8	0	3	0	1	4	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0006	2325	5	0	3	0	0	2	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0007	2325	2	0	0	0	0	2	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0008	2325	2	1	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0009	2325	2	0	0	2	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0010	2325	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0011	2325	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0012	2325	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0013	2325	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0014	2325	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0015	2325	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0016	2325	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0017	2325	1	0	0	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	c0018	2325	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFX1_chr19_13956530_14011320	0/1	c0001	2940	150	55	29	41	10	14	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	1/0	c0002	2940	90	10	19	34	3	23	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0003	2941	6	1	1	4	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0004	2941	5	2	1	2	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0005	2940	5	5	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0006	2940	4	0	0	4	0	0	copy fasta	RFX1	chr19	13956530	14011320