JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFX1_chr19_13956530_14011320	0/0	c0007	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0008	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0009	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0010	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0011	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0012	2940	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0013	2940	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0014	2940	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0015	2940	1	0	0	0	0	1	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0016	2940	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0017	2940	1	0	0	0	1	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0018	2940	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0019	2940	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	c0020	2940	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX2_chr19_5988164_6115500	1/1	c0001	2172	193	55	43	58	6	29	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0002	2172	64	10	15	23	4	12	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0003	2172	14	13	1	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0004	2172	13	13	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0005	2172	9	0	0	9	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0006	2172	5	0	0	5	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0007	2172	2	0	0	2	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0008	2172	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0009	2172	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0011	2172	1	0	1	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0012	2172	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0013	2172	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0014	2172	1	0	0	0	0	1	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	c0015	2172	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX3_chr9_3213297_3531001	1/1	c0001	2250	187	75	34	62	2	12	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0002	2250	4	0	0	4	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0003	2250	1	1	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0004	2250	1	0	0	1	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0005	2250	1	1	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0006	2250	1	0	0	1	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	c0007	2250	1	1	0	0	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX4_chr12_106578004_106767803	1/1	c0001	2208	167	41	37	61	6	20	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0002	2208	107	28	24	34	6	15	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0003	2208	14	11	2	0	0	1	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0004	2208	4	4	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0005	2208	1	0	1	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0006	2208	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0007	2208	1	0	0	1	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	c0008	2208	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX5_chr1_151335640_151352252	0/1	c0001	1851	364	71	56	177	17	42	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0002	1851	12	0	7	0	1	4	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0003	1851	8	8	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	1/0	c0004	1851	5	4	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0005	1851	3	0	0	3	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0006	1851	3	3	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252