JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFX5_chr1_151335640_151352252	0/0	c0007	1851	2	0	2	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0008	1851	2	0	0	2	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0009	1851	2	2	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0010	1851	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0011	1851	1	1	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0012	1851	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0013	1851	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0014	1851	1	0	1	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0015	1851	1	1	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	c0016	1851	1	0	0	1	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX6_chr6_116872242_116937161	1/1	c0001	2787	237	63	43	96	12	21	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0002	2787	103	10	10	60	4	19	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0003	2787	10	9	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0004	2787	5	4	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0005	2787	4	0	4	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0006	2787	2	2	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0007	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0008	2787	1	0	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0009	2787	1	0	0	1	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0010	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0011	2787	1	0	0	1	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0012	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0013	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0014	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0015	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0016	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	c0017	2787	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX7_chr15_56082280_56248879	0/0	c0001	4383	156	49	33	51	10	13	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0002	4383	88	7	11	62	1	7	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0003	4383	52	11	5	31	2	3	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/1	c0004	4383	19	1	12	2	1	2	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	1/0	c0005	4383	15	12	2	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0006	4383	8	0	3	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0007	4383	6	0	1	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0008	4383	5	0	0	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0009	4383	2	2	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0010	4383	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0011	4383	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0012	4383	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0013	4383	1	0	1	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0014	4383	1	0	0	0	0	1	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0015	4383	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0016	4383	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0017	4383	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	c0018	4383	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX8_chr2_101392359_101480112	0/1	c0001	1422	149	29	33	64	7	15	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0002	1422	111	20	21	52	7	11	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	1/0	c0003	1422	43	12	10	20	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0004	1422	6	0	2	4	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0005	1422	5	5	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112