JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RFX8_chr2_101392359_101480112	0/0	c0006	1422	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0007	1422	3	2	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0008	1422	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0009	1419	3	2	1	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0010	1422	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0011	1422	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0012	1422	2	1	1	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0013	1422	2	0	0	0	0	2	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0014	1422	2	2	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0015	1422	2	2	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0016	1422	2	0	0	0	0	2	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0017	1422	2	2	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0018	1422	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0019	1422	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0020	1422	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0021	1422	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0022	1422	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0023	1422	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0024	1422	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	c0025	1422	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFXANK_chr19_19187258_19206866	1/1	c0001	783	356	94	61	152	12	35	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0002	783	37	0	0	37	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0003	783	21	0	12	5	1	3	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0004	783	11	0	2	0	3	6	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0005	783	2	0	0	2	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0006	783	2	2	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0007	783	1	0	1	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0008	783	1	0	0	1	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	c0009	783	1	0	0	1	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXAP_chr13_36814222_36834104	1/1	c0001	819	422	89	67	202	16	46	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	c0002	819	3	0	0	2	0	1	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	c0003	819	2	0	1	0	0	1	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	c0004	819	1	1	0	0	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	c0005	819	1	0	0	1	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	c0006	819	1	0	0	1	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RGCC_chr13_41452550_41475871	0/0	c0001	414	282	69	41	149	7	16	copy fasta	RGCC	chr13	41452550	41475871
RGCC_chr13_41452550_41475871	1/1	c0002	414	166	23	43	63	9	26	copy fasta	RGCC	chr13	41452550	41475871
RGL1_chr1_183800120_183933532	1/1	c0001	2307	220	62	45	82	8	21	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0002	2307	68	20	21	17	5	5	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0003	2307	4	0	0	4	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0004	2307	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0005	2307	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0006	2307	1	0	0	0	1	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	c0007	2307	1	0	0	1	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL2_chr6_33286654_33303942	0/1	c0001	2334	339	65	68	159	16	30	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0002	2334	17	11	1	2	0	3	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0003	2334	13	8	2	2	0	1	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0004	2334	9	9	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0005	2334	4	0	3	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0006	2334	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942