JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGL2_chr6_33286654_33303942	0/0	c0007	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0008	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0009	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0010	2334	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0011	2334	1	0	1	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0012	2334	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0013	2334	1	0	1	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0014	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0015	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	c0016	2334	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL3_chr19_11389060_11424314	0/0	c0001	2133	67	21	14	21	5	6	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	1/1	c0002	2133	60	9	16	15	7	11	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0003	2133	48	31	2	14	0	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0004	2133	40	6	8	23	0	3	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0005	2133	36	0	7	24	0	5	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0006	2133	29	0	5	20	3	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0007	2133	27	12	4	9	0	2	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0008	2133	20	0	0	19	0	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0009	2133	18	5	0	13	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0010	2133	14	5	1	8	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0011	2133	12	1	2	7	1	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0012	2133	8	2	1	1	0	4	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0013	2133	4	0	0	4	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0014	2133	2	0	0	0	0	2	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0015	2133	2	0	2	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0016	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0017	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0018	2133	1	0	0	0	0	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0019	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0020	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0021	2133	1	1	0	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0022	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0023	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0024	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0025	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0026	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0027	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0028	2133	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0029	2133	1	1	0	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	c0030	2133	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL4_chr22_23686013_23704168	0/0	c0001	1422	151	32	32	65	4	18	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	1/0	c0002	1422	104	1	17	62	9	14	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/1	c0003	1422	58	0	9	42	2	4	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0004	1422	30	28	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0005	1422	29	4	11	9	1	4	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0006	1422	13	2	0	10	0	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0007	1422	9	9	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0008	1422	6	4	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0009	1422	4	3	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0010	1422	3	2	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168