JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGL4_chr22_23686013_23704168	0/0	c0011	1422	3	0	0	3	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0012	1422	3	3	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0013	1422	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0014	1422	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0015	1422	1	0	0	0	0	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0016	1422	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0017	1422	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0018	1422	1	0	0	1	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0019	1422	1	0	0	1	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0020	1422	1	0	0	1	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0021	1422	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0022	1422	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	c0023	1422	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGMA_chr15_93030271_93094211	0/1	c0001	1353	187	17	34	106	5	24	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	1/0	c0002	1353	99	33	21	27	6	11	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0003	1353	65	20	17	19	2	7	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0004	1353	23	18	1	1	2	1	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0005	1353	10	0	4	6	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0006	1353	9	5	0	0	1	3	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0007	1353	3	2	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0008	1353	3	0	0	3	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0009	1353	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0010	1353	2	0	2	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0011	1353	2	0	0	2	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0013	1353	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0014	1353	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0016	1353	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0017	1353	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0018	1353	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0019	1353	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	c0020	1353	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMB_chr5_98768663_98801494	0/0	c0001	1314	243	75	42	87	12	27	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/1	c0002	1314	120	18	28	59	0	14	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	1/0	c0003	1314	4	0	3	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0004	1314	3	3	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0005	1292	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0006	1314	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0007	1314	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	c0010	1314	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGN_chrX_47073443_47098313	1/1	c0001	900	289	63	56	127	11	30	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0002	900	3	0	0	3	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0003	900	2	2	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0004	898	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0005	901	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0006	900	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0007	901	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313