JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGN_chrX_47073443_47098313	0/0	c0008	900	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0009	901	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0010	901	1	0	1	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0011	900	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0012	901	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	c0013	911	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGP1_chr9_35744287_35763585	1/1	c0001	1176	262	53	43	118	10	36	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0002	1176	151	41	21	79	2	8	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0003	1176	19	0	1	18	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0004	1176	2	0	2	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0005	1176	1	0	0	1	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0006	1176	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0007	1176	1	0	1	0	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	c0008	1176	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGPD1_chr2_86937118_87018976	0/0	c0001	5271	82	4	21	38	10	9	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0002	5271	4	0	0	3	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0003	5271	3	2	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0004	5271	3	0	3	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0005	5271	2	0	0	2	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0006	5271	2	0	0	2	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0007	5199	1	0	0	0	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0008	5271	1	0	0	0	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0009	5271	1	1	0	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0010	5271	1	0	1	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0011	5271	1	1	0	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	c0012	5271	1	0	1	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD2_chr2_87750960_87830796	0/0	c0001	5271	90	23	30	17	7	13	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0002	5271	26	7	4	7	0	8	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0003	5271	16	16	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0004	5271	6	0	0	6	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0005	5271	6	0	2	4	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0006	5271	6	0	4	2	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0007	5271	2	0	1	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0008	5271	2	0	1	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0009	5271	2	0	0	2	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0010	5271	2	0	2	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0011	5271	2	2	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0012	5271	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0013	5271	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0014	5271	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0015	5271	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0016	5271	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0017	5271	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0018	5271	1	0	0	1	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0019	5271	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0020	5271	1	0	0	1	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0021	5271	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0022	5271	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0023	5271	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	c0024	5271	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796