JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASPM_chr1_197079127_197151669	0/0	c0002	10434	57	5	15	26	0	11	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0003	10434	56	12	11	25	2	6	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/1	c0004	10434	34	26	3	0	0	4	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0005	10434	7	0	0	7	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0006	10434	4	4	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0007	10434	4	4	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0008	10434	4	4	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0009	10434	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0010	10434	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	1/0	c0011	10434	3	0	2	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0012	10434	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0013	10434	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0014	10434	3	0	0	3	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0015	10434	3	0	2	0	1	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0016	10434	3	3	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0017	10434	2	0	0	2	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0018	10434	2	0	0	0	1	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0019	10434	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0020	10434	2	0	0	2	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0021	10434	2	0	0	0	0	2	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0022	10434	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0023	10434	2	0	0	0	1	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0024	10434	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0025	10434	2	2	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0026	10434	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0027	10434	1	0	1	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0028	10434	1	0	0	0	1	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0029	10434	1	0	0	0	1	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0030	10434	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0031	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0032	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0033	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0034	10434	1	0	1	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0035	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0036	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0037	10434	1	0	1	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0038	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0039	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0040	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0041	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0042	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0043	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0044	10434	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0045	10434	1	1	0	0	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0046	10434	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0047	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0048	10434	1	0	0	1	0	0	copy fasta	ASPM	chr1	197079127	197151669
ASPM_chr1_197079127_197151669	0/0	c0049	10434	1	0	0	0	0	1	copy fasta	ASPM	chr1	197079127	197151669
ASPRV1_chr2_69955089_69966631	1/1	c0001	780	454	91	82	215	14	50	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0002	780	2	2	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631