JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGPD4_chr2_107821892_107897544	0/0	c0034	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0035	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0036	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0037	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0038	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0039	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0040	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0041	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0042	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0043	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0044	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0045	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0046	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0047	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0048	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0049	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0050	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0051	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0052	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0053	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0054	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0055	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0056	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0057	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0058	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0059	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0060	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0061	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0062	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0063	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0064	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0065	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0066	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0067	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0068	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0069	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0070	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0071	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0072	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0073	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0074	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0075	5277	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0076	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0077	5277	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD5_chr2_109789305_109862705	0/0	c0001	5298	7	4	1	2	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0002	5298	6	0	2	1	3	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0003	5298	5	0	0	3	2	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0004	5298	3	3	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0005	5298	2	2	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0006	5298	2	2	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705