JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGS11_chr16_263307_280944	0/0	c0016	1404	3	3	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0017	1404	3	0	3	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0018	1404	2	0	0	2	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0019	1404	2	0	0	2	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0020	1404	2	2	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0021	1404	2	1	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0022	1404	2	0	2	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0023	1404	2	2	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0024	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0025	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0026	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0027	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0028	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0029	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0030	1404	1	0	0	0	1	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0031	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0032	1404	1	0	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0033	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0034	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0035	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0036	1404	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0037	1404	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS12_chr4_3288021_3444913	0/0	c0001	4344	38	0	11	20	2	5	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0002	4344	36	23	6	1	2	4	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0003	4344	32	0	9	17	1	5	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0004	4344	26	10	5	10	0	1	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/1	c0005	4344	18	3	6	0	2	6	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0006	4344	15	0	1	8	0	6	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	1/0	c0007	4344	14	0	7	4	2	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0008	4344	9	2	0	7	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0009	4344	9	6	3	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0010	4344	8	0	5	3	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0011	4344	8	1	1	6	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0012	4344	8	6	2	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0013	4344	7	0	7	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0014	4344	7	3	0	2	0	2	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0015	4344	6	0	1	2	0	3	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0016	4344	6	5	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0017	4344	6	5	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0018	4344	4	0	0	2	0	2	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0019	4344	4	3	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0020	4344	4	4	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0021	4344	3	0	0	1	0	2	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0022	4344	3	2	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0023	4344	3	0	0	3	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0024	4344	2	0	0	2	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0025	4344	2	0	0	2	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0026	4344	2	0	2	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0027	4344	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0028	4344	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913