JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGS12_chr4_3288021_3444913	0/0	c0029	4344	2	1	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0030	4344	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0031	4344	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0032	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0033	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0034	4344	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0035	4344	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0036	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0037	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0038	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0039	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0040	4344	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0041	4344	1	0	0	0	0	1	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0042	4344	1	0	0	0	0	1	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0043	4344	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0044	4344	1	0	0	0	1	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0045	4344	1	0	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0046	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0047	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0048	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0049	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0050	4344	1	0	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0051	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0052	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0053	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	c0054	4344	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS13_chr1_192631147_192665311	1/1	c0001	480	383	80	57	191	12	41	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0002	480	13	0	6	7	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0003	480	11	2	4	0	2	3	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0004	480	9	9	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0005	480	2	2	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0006	480	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	c0007	480	1	1	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS14_chr5_177352924_177377596	1/1	c0001	1701	396	88	79	164	18	45	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0002	1701	6	5	1	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0003	1701	6	0	0	6	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0004	1701	2	2	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0005	1701	2	0	0	2	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0006	1701	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0007	1701	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0008	1701	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0009	1701	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0010	1701	1	0	0	0	0	1	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	c0011	1701	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS16_chr1_182593623_182609389	0/1	c0001	609	424	78	76	208	16	45	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	c0002	609	9	7	2	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	1/0	c0003	609	5	4	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	c0004	609	3	1	0	2	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	c0005	609	1	0	0	0	0	1	copy fasta	RGS16	chr1	182593623	182609389
RGS17_chr6_152999459_153136282	0/1	c0001	633	177	60	20	73	3	20	copy fasta	RGS17	chr6	152999459	153136282