JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGS17_chr6_152999459_153136282	1/0	c0002	633	152	30	43	56	8	14	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	c0003	633	8	0	5	0	1	2	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	c0004	633	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS18_chr1_192153462_192190815	1/1	c0001	708	330	66	54	163	10	35	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	c0002	708	5	0	0	5	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	c0003	708	1	0	0	0	0	1	copy fasta	RGS18	chr1	192153462	192190815
RGS19_chr20_64068181_64084518	1/1	c0001	654	387	91	77	153	16	48	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	c0002	654	1	1	0	0	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	c0003	654	1	0	0	1	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	c0004	654	1	0	1	0	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS1_chr1_192570773_192585024	1/1	c0001	630	481	96	87	236	17	43	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	c0002	630	9	0	1	8	0	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	c0003	630	1	0	0	0	0	1	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	c0004	630	1	0	0	0	1	0	copy fasta	RGS1	chr1	192570773	192585024
RGS20_chr8_53846795_53964303	1/1	c0001	1167	242	61	51	100	4	24	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	c0002	1167	8	8	0	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	c0003	1167	6	6	0	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	c0004	1167	1	0	1	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS20_chr8_53846795_53964303	0/0	c0005	1167	1	1	0	0	0	0	copy fasta	RGS20	chr8	53846795	53964303
RGS21_chr1_192311992_192372285	1/1	c0001	459	296	84	54	112	4	40	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	c0002	459	2	0	0	0	2	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	c0003	459	2	0	0	2	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	c0004	459	1	1	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	c0005	459	1	1	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS22_chr8_99955936_100111049	1/1	c0001	3795	209	27	46	97	8	29	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0002	3795	22	1	1	18	0	2	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0003	3795	20	13	0	6	0	1	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0004	3795	15	12	3	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0005	3795	14	14	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0006	3795	3	0	1	2	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0007	3795	3	3	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0008	3795	3	0	0	3	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0009	3795	2	2	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0010	3795	2	0	0	2	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0011	3795	2	0	0	1	0	1	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0012	3795	2	2	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0013	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0014	3795	1	0	0	0	0	1	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0015	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0016	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0017	3795	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0018	3795	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0019	3795	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0020	3795	1	0	1	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0021	3795	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0022	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0023	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0024	3795	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	c0025	3795	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS2_chr1_192804039_192817275	1/1	c0001	636	401	92	63	184	18	42	copy fasta	RGS2	chr1	192804039	192817275