JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGS2_chr1_192804039_192817275	0/0	c0002	636	15	0	8	7	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0003	636	9	0	0	9	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0004	636	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0005	636	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0006	636	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0007	636	1	0	1	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	c0008	636	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS3_chr9_113458727_113602738	1/0	c0001	3261	95	26	18	34	4	12	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0002	3261	21	6	8	5	1	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0003	3261	13	3	6	0	2	2	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0004	3261	8	6	2	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0005	3261	7	7	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0006	3261	6	6	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/1	c0007	3261	4	0	3	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0008	3261	2	2	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0009	3261	1	0	0	1	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0010	3261	1	0	1	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0011	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0012	3261	1	0	0	0	1	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0013	3261	1	0	0	0	0	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0014	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0015	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0016	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0017	3261	1	0	0	0	0	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0018	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0019	3261	1	0	0	0	0	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	c0020	3261	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS4_chr1_163064361_163081802	1/1	c0001	618	444	94	79	204	16	49	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	c0002	618	2	0	0	1	0	1	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	c0003	618	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	c0004	618	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	c0005	618	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	c0006	618	1	0	1	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS5_chr1_163137299_163207916	1/1	c0001	546	321	85	60	118	14	42	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	c0002	546	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS6_chr14_71927429_72571530	0/0	c0001	1473	108	63	24	14	2	5	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	c0002	1473	16	3	6	4	0	3	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	c0003	1473	3	3	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	c0004	1473	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	c0005	1473	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS6_chr14_71927429_72571530	0/0	c0006	1473	1	1	0	0	0	0	copy fasta	RGS6	chr14	71927429	72571530
RGS7BP_chr5_64501015_64617319	0/1	c0001	774	195	65	46	52	6	25	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	1/0	c0002	774	83	19	13	37	0	13	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	c0003	774	1	0	0	1	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	c0004	774	1	0	1	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7_chr1_240770514_241362205	0/0	c0001	1488	110	66	20	10	4	10	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	c0002	1488	1	1	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS7_chr1_240770514_241362205	0/0	c0003	1488	1	1	0	0	0	0	copy fasta	RGS7	chr1	240770514	241362205
RGS8_chr1_182636818_182689587	1/1	c0001	543	295	89	50	120	8	26	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	c0002	543	3	3	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587