JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGS8_chr1_182636818_182689587	0/0	c0003	543	2	2	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS9BP_chr19_32670848_32683300	1/0	c0001	708	215	56	27	103	9	19	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/1	c0002	708	154	38	31	56	6	22	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0003	708	42	1	5	34	0	2	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0004	708	27	0	3	20	1	3	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0005	708	2	0	2	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0006	708	1	0	0	1	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0007	708	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0008	708	1	0	1	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	c0009	708	1	1	0	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9_chr17_65132370_65232703	1/1	c0001	2025	200	76	48	45	8	21	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0002	2025	6	0	0	4	0	2	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0003	2025	6	6	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0004	2025	2	2	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0005	2025	2	2	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0006	2025	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0007	2025	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0008	2025	1	0	0	1	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0009	2025	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0010	2025	1	0	0	0	0	1	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	c0011	2025	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGSL1_chr1_182445146_182565597	0/0	c0001	3231	93	21	21	37	6	8	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0002	3231	76	8	12	46	2	8	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0003	3231	67	11	10	40	1	5	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	1/1	c0004	3231	59	14	15	17	4	7	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0005	3231	8	8	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0006	3231	5	5	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0007	3231	4	4	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0008	3231	3	0	0	0	1	2	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0009	3231	3	2	1	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0010	3231	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0011	3231	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0012	3231	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0013	3231	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0014	3231	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0015	3231	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0016	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0017	3231	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0018	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0019	3231	1	0	1	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0020	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0021	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0022	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0023	3231	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0024	3231	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	c0025	3231	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RHAG_chr6_49600175_49641839	1/1	c0001	1230	365	80	72	158	18	35	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0002	1230	27	8	1	11	0	7	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0003	1230	3	3	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0004	1230	1	1	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839