JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHAG_chr6_49600175_49641839	0/0	c0005	1230	1	0	1	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0007	1230	1	1	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHBDD1_chr2_226831054_227004210	1/1	c0001	948	240	52	38	116	8	24	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0002	948	10	10	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0003	948	4	4	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0004	948	3	3	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0005	948	2	2	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0006	948	2	0	0	0	0	2	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0007	948	1	1	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0008	948	1	0	0	1	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	c0009	948	1	0	0	1	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD2_chr7_75874034_75893926	0/1	c0001	1095	380	98	67	155	15	44	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	1/0	c0002	1095	7	0	2	0	1	3	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0003	1095	2	0	0	2	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0004	1095	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0005	1095	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0006	1054	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0007	1095	1	0	1	0	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	c0008	1095	1	0	0	0	0	1	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD3_chr22_29254872_29272981	1/0	c0001	1161	250	66	26	125	7	25	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0002	1161	126	13	26	68	7	12	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/1	c0003	1161	55	6	25	11	3	9	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0004	1161	5	5	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0005	1161	3	3	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0006	1161	2	0	0	2	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0007	1161	2	0	2	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0008	1161	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0009	1161	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0010	1161	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0011	1161	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0012	1161	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0013	1161	1	0	1	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0014	1161	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0015	1161	1	0	0	0	1	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	c0016	1161	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDF1_chr16_53059_77631	0/1	c0001	2568	206	44	50	64	12	35	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	1/0	c0002	2568	104	1	15	73	5	9	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0003	2568	22	21	0	0	0	1	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0004	2568	14	0	0	14	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0005	2568	12	12	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0006	2568	6	3	3	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0007	2568	5	1	3	0	1	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0008	2568	4	4	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0009	2568	4	2	2	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0010	2568	3	0	0	3	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0011	2568	2	2	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0012	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0013	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631