JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHBDF1_chr16_53059_77631	0/0	c0014	2568	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0015	2568	1	0	0	0	0	1	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0016	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0017	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0018	2568	1	0	1	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0019	2578	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0020	2568	1	0	1	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0021	2568	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0022	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0023	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0024	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0025	2568	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0026	2568	1	0	1	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	c0027	2568	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF2_chr17_76465896_76506423	0/1	c0001	2484	237	33	53	102	11	37	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	1/0	c0002	2484	47	38	6	0	0	2	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0003	2484	29	6	3	17	0	3	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0004	2484	12	0	1	11	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0005	2484	6	2	2	0	1	1	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0006	2484	5	4	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0007	2484	4	0	0	4	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0008	2484	4	0	3	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0009	2484	2	0	0	2	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0010	2484	2	0	1	0	0	1	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0011	2484	2	1	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0012	2484	2	0	0	0	0	2	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0013	2484	2	0	0	0	2	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0014	2484	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0015	2484	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0016	2484	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0017	2484	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0018	2484	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0019	2484	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0020	2484	1	0	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0021	2484	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0022	2484	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	c0023	2484	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDL1_chr16_670671_683268	1/1	c0001	1122	364	95	68	142	10	47	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0002	1122	2	0	2	0	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0003	1122	1	0	0	0	0	1	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0004	1122	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0005	1122	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0007	1122	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	c0008	1122	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL2_chr1_38880807_38946830	1/1	c0001	912	269	70	43	116	8	30	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	c0002	912	87	14	17	43	3	10	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	c0003	912	6	6	0	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	c0004	912	1	0	0	1	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	c0005	912	1	0	0	0	1	0	copy fasta	RHBDL2	chr1	38880807	38946830