JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASPRV1_chr2_69955089_69966631	0/0	c0003	780	2	0	0	2	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0004	780	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0005	780	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0006	780	1	0	0	1	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0007	780	1	0	0	1	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0008	780	1	1	0	0	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPRV1_chr2_69955089_69966631	0/0	c0009	780	1	0	0	1	0	0	copy fasta	ASPRV1	chr2	69955089	69966631
ASPSCR1_chr17_81972629_82022406	1/1	c0001	1662	126	12	18	70	5	19	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0002	1662	116	26	30	42	6	12	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0003	1662	39	13	8	9	1	8	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0004	1662	21	6	3	9	2	1	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0005	1662	12	2	1	7	2	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0006	1662	7	7	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0007	1662	7	7	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0008	1662	6	6	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0009	1649	4	4	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0010	1662	4	2	2	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0011	1662	4	0	2	2	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0012	1662	3	1	2	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0013	1662	3	0	3	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0014	1662	2	0	0	2	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0015	1662	2	2	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0016	1649	2	0	0	2	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0017	1662	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0018	1662	1	0	1	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0019	1662	1	0	0	1	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0020	1649	1	0	0	1	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0021	1662	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0022	1662	1	0	0	1	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0023	1662	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASPSCR1_chr17_81972629_82022406	0/0	c0024	1662	1	1	0	0	0	0	copy fasta	ASPSCR1	chr17	81972629	82022406
ASRGL1_chr11_62332448_62398412	1/1	c0001	927	337	88	66	139	16	26	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0002	927	21	0	0	20	0	1	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0003	927	3	0	0	3	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0004	927	2	2	0	0	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0005	927	2	0	0	2	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0006	927	1	1	0	0	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0007	927	1	0	0	1	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0008	927	1	0	0	1	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0009	927	1	0	0	0	0	1	copy fasta	ASRGL1	chr11	62332448	62398412
ASRGL1_chr11_62332448_62398412	0/0	c0010	927	1	1	0	0	0	0	copy fasta	ASRGL1	chr11	62332448	62398412
ASS1_chr9_130439961_130506274	1/1	c0001	1239	297	66	58	127	14	30	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0002	1239	31	6	6	10	2	7	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0003	1239	23	14	6	0	2	1	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0004	1239	6	5	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0005	1239	3	0	0	3	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0006	1239	2	1	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0007	1239	2	0	0	2	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0008	1239	2	1	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0009	1239	2	0	2	0	0	0	copy fasta	ASS1	chr9	130439961	130506274