JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHBDL3_chr17_32260832_32329659	1/1	c0001	1215	204	74	57	39	10	22	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0002	1215	95	14	8	51	4	18	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0003	1215	1	0	0	0	0	1	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0004	1215	1	0	0	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0005	1215	1	0	0	0	0	1	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0007	1215	1	0	1	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	c0009	1215	1	0	0	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBG_chr1_156364211_156390219	0/0	c0001	1377	113	18	15	73	3	4	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/1	c0002	1378	94	13	23	44	3	10	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0003	1377	59	16	5	25	3	10	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0004	1378	53	2	21	11	4	15	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0005	1377	28	22	1	4	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0006	1378	19	12	2	5	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0007	1378	18	7	7	0	1	3	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0008	1378	11	0	0	11	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0009	1378	8	0	0	8	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0010	1378	7	0	1	5	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0011	1378	7	1	1	3	2	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0012	1378	4	0	0	4	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0013	1377	3	0	0	3	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0014	1378	2	1	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0015	1378	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0016	1378	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0017	1378	1	0	0	0	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0018	1377	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0019	1378	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0020	1378	1	0	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0021	1378	1	0	0	0	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0022	1378	1	0	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0023	1378	1	0	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0024	1377	1	0	0	1	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	1/0	c0025	1377	1	0	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	c0026	1378	1	0	0	1	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHCE_chr1_25357249_25425825	0/1	c0001	1254	129	3	31	72	5	17	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0002	1254	71	5	8	50	3	5	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0003	1254	43	13	13	3	6	8	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	1/0	c0004	1254	25	18	1	5	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0005	1254	18	15	3	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0006	1254	8	8	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0007	1254	6	6	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0008	1254	5	4	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0009	1254	4	3	0	0	0	1	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0010	1254	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0011	1254	2	2	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0012	1254	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0013	1254	2	2	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0014	1254	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0015	1254	2	0	0	2	0	0	copy fasta	RHCE	chr1	25357249	25425825