JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHCE_chr1_25357249_25425825	0/0	c0016	1254	2	0	0	2	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0017	1254	2	0	0	2	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0018	1254	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0019	1254	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0020	1254	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0021	1254	1	0	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0022	1254	1	0	0	1	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0023	1254	1	0	0	0	0	1	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0024	1254	1	0	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0025	1254	1	0	0	1	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	c0026	1254	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCG_chr15_89466407_89501583	1/1	c0001	1440	318	85	61	132	9	29	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0002	1440	20	2	8	4	2	4	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0003	1440	7	0	4	2	1	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0004	1440	4	0	0	4	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0005	1440	2	1	1	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0006	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0007	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0008	1440	1	0	1	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0009	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0010	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0011	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0012	1440	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0013	1440	1	0	1	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	c0014	1440	1	0	0	0	0	1	copy fasta	RHCG	chr15	89466407	89501583
RHD_chr1_25267509_25335445	0/1	c0001	1254	186	28	36	94	6	21	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	1/0	c0002	1254	12	10	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0003	1254	4	3	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0004	1254	4	4	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0005	1254	3	3	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0006	1254	2	0	0	2	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0007	1254	1	0	0	0	0	1	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0008	1254	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHEBL1_chr12_49059676_49074979	1/1	c0001	552	374	90	68	160	14	40	copy fasta	RHEBL1	chr12	49059676	49074979
RHEB_chr7_151461012_151524895	1/1	c0001	555	360	84	70	156	14	34	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	c0002	555	1	0	0	1	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	c0003	555	1	1	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	c0004	555	1	0	0	1	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEB_chr7_151461012_151524895	0/0	c0005	555	1	1	0	0	0	0	copy fasta	RHEB	chr7	151461012	151524895
RHEX_chr1_206048173_206107449	1/1	c0001	519	244	52	47	111	10	22	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0002	519	29	1	4	12	2	10	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0003	519	22	19	3	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0004	516	14	0	9	5	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0005	519	9	9	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0006	519	8	7	1	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0007	519	3	3	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0008	519	2	2	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0009	519	1	0	0	1	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	c0010	519	1	1	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449