JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHEX_chr1_206048173_206107449	0/0	c0011	519	1	0	0	1	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHNO1_chr12_2872223_2894524	0/1	c0001	717	252	60	42	122	3	24	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	1/0	c0002	717	169	33	33	75	11	16	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	c0003	717	2	0	0	0	0	2	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	c0004	717	1	0	1	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	c0005	717	1	1	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	c0006	717	1	0	0	1	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHOA_chr3_49354145_49416976	1/1	c0001	582	264	90	52	62	18	40	copy fasta	RHOA	chr3	49354145	49416976
RHOBTB1_chr10_60864438_60949185	1/1	c0001	2091	276	83	40	112	15	24	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0002	2091	27	1	9	13	1	3	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0003	2091	4	4	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0004	2091	2	1	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0005	2091	2	0	0	2	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0006	2091	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0007	2091	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0008	2091	1	1	0	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0009	2091	1	0	0	1	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	c0010	2091	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB2_chr8_22994548_23025199	0/1	c0001	2184	303	57	57	134	14	40	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	1/0	c0002	2184	33	12	10	4	2	4	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0003	2184	8	7	1	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0004	2184	5	5	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0005	2184	2	0	2	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0006	2184	2	2	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0007	2184	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0008	2184	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0009	2184	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0010	2184	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	c0011	2184	1	1	0	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB3_chr5_95726336_95801361	1/1	c0001	1836	161	47	41	44	5	22	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0002	1836	116	26	17	56	2	15	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0003	1836	12	11	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0004	1836	5	0	3	0	1	1	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0005	1836	3	0	0	3	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0006	1836	2	0	0	0	0	2	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0007	1836	1	0	0	1	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0008	1836	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0009	1836	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0010	1836	1	1	0	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	c0011	1836	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOB_chr2_20442074_20454440	1/1	c0001	591	364	96	70	144	12	40	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	c0002	591	3	0	3	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOB_chr2_20442074_20454440	0/0	c0003	591	1	0	1	0	0	0	copy fasta	RHOB	chr2	20442074	20454440
RHOC_chr1_112696131_112712127	1/1	c0001	582	421	97	80	186	14	42	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	c0002	582	5	0	0	5	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	c0003	582	1	1	0	0	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	c0004	582	1	0	0	1	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOD_chr11_67051847_67077017	1/1	c0001	633	230	75	30	99	9	15	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0002	633	153	18	32	74	4	25	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0003	633	3	3	0	0	0	0	copy fasta	RHOD	chr11	67051847	67077017