JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHOD_chr11_67051847_67077017	0/0	c0004	633	3	0	2	0	1	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0005	633	2	0	2	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0006	633	1	0	1	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0007	633	1	0	0	1	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	c0008	633	1	0	1	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOF_chr12_121772754_121798688	1/1	c0001	636	366	89	64	155	18	38	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	c0002	636	11	8	3	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	c0003	636	7	0	0	3	0	4	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	c0004	636	1	0	1	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	c0005	636	1	1	0	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOG_chr11_3821978_3845959	1/1	c0001	576	465	98	80	223	16	46	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	c0002	576	2	0	0	0	0	2	copy fasta	RHOG	chr11	3821978	3845959
RHOG_chr11_3821978_3845959	0/0	c0003	576	1	0	0	1	0	0	copy fasta	RHOG	chr11	3821978	3845959
RHOH_chr4_40192031_40251967	1/1	c0001	576	315	32	64	181	6	30	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	c0002	576	1	0	0	1	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOJ_chr14_63199443_63298508	1/1	c0001	645	306	89	41	150	8	16	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	c0002	645	8	3	5	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	c0003	645	4	2	2	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOJ_chr14_63199443_63298508	0/0	c0004	645	2	2	0	0	0	0	copy fasta	RHOJ	chr14	63199443	63298508
RHOQ_chr2_46537490_46589688	1/1	c0001	618	318	98	68	107	11	32	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	c0002	618	9	0	8	0	1	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	c0003	618	4	0	0	4	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	c0004	618	1	0	0	1	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOT1_chr17_32137502_32230727	1/1	c0001	1980	145	40	26	59	5	13	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	c0002	1980	122	37	16	53	3	13	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	c0003	1980	14	14	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	c0004	1980	1	0	0	1	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	c0005	1980	1	1	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	c0006	1980	1	0	0	1	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT2_chr16_663132_679171	0/0	c0001	1857	124	1	20	82	4	17	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0002	1857	75	18	11	41	1	4	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/1	c0003	1857	49	7	22	0	3	16	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0004	1857	21	18	2	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0005	1857	11	9	2	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0006	1857	9	9	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0007	1857	9	2	1	5	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0008	1857	8	0	1	6	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0009	1857	6	6	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0010	1857	5	4	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0011	1857	5	0	0	5	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0012	1857	5	2	3	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0013	1857	5	5	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0014	1857	4	1	0	2	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0015	1857	3	1	0	1	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	1/0	c0016	1857	3	0	1	0	1	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0017	1857	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0018	1857	2	0	0	0	0	2	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0019	1857	2	1	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0020	1857	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0021	1857	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171