JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHOT2_chr16_663132_679171	0/0	c0022	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0023	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0024	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0025	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0026	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0027	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0028	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0029	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0030	1857	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0031	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0032	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0033	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0034	1846	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0035	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0036	1857	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0037	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0038	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0039	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0040	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0041	1857	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0042	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0043	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0044	1857	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0045	1857	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0046	1857	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0047	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0048	1857	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	c0049	1857	1	0	0	0	1	0	copy fasta	RHOT2	chr16	663132	679171
RHOU_chr1_228730479_228751664	1/1	c0001	777	335	85	66	145	8	29	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	c0002	777	34	5	5	11	2	11	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	c0003	777	7	0	0	7	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	c0004	777	2	1	1	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	c0005	777	1	0	0	1	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOU_chr1_228730479_228751664	0/0	c0006	777	1	1	0	0	0	0	copy fasta	RHOU	chr1	228730479	228751664
RHOV_chr15_40867214_40879234	1/1	c0001	711	360	90	56	164	14	34	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	c0002	711	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	c0003	711	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOXF1_chrX_120104051_120120913	1/1	c0001	555	299	69	52	136	9	31	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	c0002	555	10	0	0	9	0	1	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	c0003	555	8	8	0	0	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	c0004	555	1	1	0	0	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	c0005	555	1	0	0	1	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	c0006	556	1	0	0	1	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF2B_chrX_120067264_120082690	0/0	c0001	867	63	14	11	33	2	3	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0002	867	62	10	12	28	5	7	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0003	867	46	6	8	22	2	8	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0004	867	16	11	4	0	0	1	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0005	867	9	0	0	9	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0006	867	3	3	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0007	867	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690