JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHOXF2B_chrX_120067264_120082690	0/0	c0008	867	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0009	866	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0010	870	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0011	868	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0012	870	1	0	1	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0013	883	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0014	865	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0015	868	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0016	868	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0017	867	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0018	867	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0019	860	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	c0020	867	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2_chrX_120153613_120170630	0/0	c0001	867	120	29	21	45	8	17	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0002	867	23	14	3	4	0	2	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0003	867	10	0	1	5	0	4	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0004	867	8	3	2	0	0	3	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0005	867	3	0	3	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0006	867	2	1	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0007	867	2	0	2	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0008	867	2	1	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0009	867	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0010	867	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0011	871	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0012	866	1	0	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0013	868	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0014	867	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	c0015	867	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHO_chr3_129523639_129540344	1/1	c0001	1047	397	62	67	204	14	48	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	c0002	1047	3	3	0	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	c0003	1047	1	0	1	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	c0004	1047	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	c0005	1047	1	0	0	1	0	0	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	c0006	1047	1	1	0	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHPN1_chr8_143363876_143389221	1/1	c0001	2013	373	89	65	170	10	37	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0002	2013	32	2	8	18	2	2	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0003	2013	3	0	2	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0004	2013	2	0	0	2	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0005	2013	2	2	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0006	2013	2	2	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0007	2013	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0008	2013	1	0	0	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0009	2013	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0010	2013	1	0	0	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0011	2013	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0012	2013	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0013	2013	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0014	2013	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0015	2013	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0016	2013	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221