JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RHPN1_chr8_143363876_143389221	0/0	c0017	2013	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	c0018	2013	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN2_chr19_32973592_33069888	0/0	c0001	2061	103	17	18	49	6	13	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	1/0	c0002	2061	52	3	18	26	2	2	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0003	2061	27	2	4	14	1	6	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0004	2061	25	3	3	17	1	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0005	2061	17	5	2	8	0	2	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0006	2061	17	16	1	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0007	2061	16	4	5	0	1	6	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0008	2061	9	0	1	3	1	4	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0009	2061	7	7	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0010	2061	7	7	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0011	2061	6	6	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0012	2061	6	6	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0013	2061	5	0	1	1	1	2	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0014	2061	4	2	0	2	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0015	2061	2	0	0	2	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0016	2061	2	0	0	2	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/1	c0017	2061	1	0	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0018	2061	1	0	0	0	1	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0019	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0020	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0021	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0022	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0023	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0024	2061	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0025	2061	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0026	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0027	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0028	2061	1	0	1	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0029	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0030	2061	1	0	0	0	1	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0031	2061	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0032	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0033	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0034	2061	1	0	0	0	1	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0035	2061	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0036	2061	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	c0037	2061	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RIBC1_chrX_53417873_53436115	0/1	c0001	1140	159	49	26	63	2	18	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	1/0	c0002	1140	103	10	15	58	7	12	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	c0003	1140	10	1	9	0	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	c0004	1141	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	c0005	1140	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	c0006	1140	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC1_chrX_53417873_53436115	0/0	c0007	1140	1	0	0	1	0	0	copy fasta	RIBC1	chrX	53417873	53436115
RIBC2_chr22_45408693_45437509	0/1	c0001	1149	206	63	26	93	2	21	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	1/0	c0002	1149	131	7	33	62	11	17	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0003	1149	48	7	8	24	3	6	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0004	1149	5	4	1	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509