JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIBC2_chr22_45408693_45437509	0/0	c0005	1149	5	5	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0006	1149	5	0	0	5	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0007	1149	4	4	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0008	1149	3	0	0	3	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0009	1149	3	0	0	3	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0010	1149	2	1	1	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0011	1149	2	0	1	0	0	1	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0012	1149	2	2	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0013	1149	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0014	1149	1	1	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0015	1149	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0016	1149	1	0	0	0	0	1	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0017	1149	1	1	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0018	1149	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0019	1110	1	0	0	1	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIBC2_chr22_45408693_45437509	0/0	c0020	1149	1	1	0	0	0	0	copy fasta	RIBC2	chr22	45408693	45437509
RIC1_chr9_5624107_5781557	1/0	c0001	4272	172	57	37	60	4	13	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/1	c0002	4272	83	11	14	40	8	9	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0003	4272	22	1	5	6	0	10	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0004	4272	13	1	0	12	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0005	4272	9	0	0	9	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0006	4272	3	3	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0007	4272	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0008	4272	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0009	4272	2	2	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0010	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0011	4272	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0012	4272	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0013	4272	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0014	4272	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0015	4272	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0016	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0017	4272	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0018	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0019	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0020	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0021	4272	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0022	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0023	4272	1	0	1	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0024	4272	1	0	0	1	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0025	4272	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0026	4272	1	0	0	0	0	1	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0027	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0028	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC1_chr9_5624107_5781557	0/0	c0029	4272	1	1	0	0	0	0	copy fasta	RIC1	chr9	5624107	5781557
RIC3_chr11_8101056_8174025	1/0	c0001	1110	172	45	44	61	3	18	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0002	1110	121	20	20	64	3	14	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0003	1110	31	5	6	18	0	2	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0004	1110	31	14	4	10	0	3	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0005	1110	5	5	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025