JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASS1_chr9_130439961_130506274	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0012	1239	1	0	1	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0014	1239	1	1	0	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	c0015	1239	1	1	0	0	0	0	copy fasta	ASS1	chr9	130439961	130506274
ASTE1_chr3_131008875_131031825	1/1	c0001	2040	328	74	52	162	9	29	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0002	2040	58	13	9	21	5	10	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0003	2040	8	0	0	7	0	1	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0004	2040	2	2	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0005	2040	1	0	0	1	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0006	2040	1	0	0	1	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0007	2040	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0008	2040	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0009	2040	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0010	2040	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0011	2040	1	0	1	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	c0012	2040	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTL_chr2_96117818_96143502	0/0	c0001	1296	201	61	29	83	2	26	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0002	1296	117	14	34	56	4	9	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0003	1296	29	0	6	23	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	1/1	c0004	1296	10	1	3	0	4	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0005	1295	10	10	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0006	1296	8	3	1	3	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0007	1296	7	0	0	7	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0008	1296	3	0	0	3	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0009	1296	2	1	1	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0010	1296	2	0	0	2	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0011	1296	1	0	0	0	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0012	1296	1	0	0	1	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0013	1296	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0014	1296	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0015	1296	1	0	0	0	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0016	1296	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	c0017	1296	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTN1_chr1_176856067_177169712	0/0	c0001	3885	25	6	7	7	2	3	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0002	3885	19	18	1	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/1	c0003	3885	17	12	2	0	1	1	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0004	3885	12	0	8	2	1	1	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0005	3885	6	6	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0006	3885	5	1	0	1	1	2	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0007	3885	5	5	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	1/0	c0008	3885	5	1	0	2	0	1	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0009	3885	5	4	1	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0010	3885	5	1	1	2	1	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0011	3885	3	3	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0012	3885	2	2	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0013	3885	1	0	0	1	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0014	3885	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	c0015	3885	1	0	0	1	0	0	copy fasta	ASTN1	chr1	176856067	177169712