JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIGI_chr9_32450302_32531196	0/0	c0016	2778	1	0	1	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0017	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0018	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0019	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0020	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0021	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0022	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0023	2778	1	0	0	0	1	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0024	2778	1	0	0	0	0	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0025	2778	1	1	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIIAD1_chr1_151716522_151734805	1/1	c0001	279	402	76	78	186	14	46	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	c0002	279	11	11	0	0	0	0	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	c0003	279	4	4	0	0	0	0	copy fasta	RIIAD1	chr1	151716522	151734805
RIIAD1_chr1_151716522_151734805	0/0	c0004	279	1	1	0	0	0	0	copy fasta	RIIAD1	chr1	151716522	151734805
RILPL1_chr12_123465054_123538719	0/0	c0001	1212	94	19	33	17	11	14	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	1/0	c0002	1212	58	32	8	6	5	6	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0003	1212	30	25	5	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/1	c0004	1212	22	8	6	1	2	4	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0005	1212	2	2	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0006	1212	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0007	1212	1	0	1	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0008	1212	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL1_chr12_123465054_123538719	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	RILPL1	chr12	123465054	123538719
RILPL2_chr12_123410039_123441684	1/1	c0001	636	384	87	78	159	18	40	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	c0002	636	1	0	0	1	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILPL2_chr12_123410039_123441684	0/0	c0003	636	1	1	0	0	0	0	copy fasta	RILPL2	chr12	123410039	123441684
RILP_chr17_1641150_1654866	0/1	c0001	1206	300	51	52	141	15	40	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0002	1206	18	12	0	5	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0003	1206	10	10	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0004	1206	5	2	1	0	1	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0005	1206	4	4	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0006	1206	4	0	2	0	0	2	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0007	1206	3	0	0	3	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0008	1206	3	3	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0009	1206	3	0	3	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0010	1206	3	3	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0011	1206	2	0	0	2	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0012	1206	2	2	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0013	1206	2	2	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0014	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0015	1206	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0016	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0017	1206	1	0	0	0	1	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0018	1206	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0019	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0020	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0021	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0022	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0023	1206	1	0	0	0	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0024	1206	1	0	1	0	0	0	copy fasta	RILP	chr17	1641150	1654866