JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RILP_chr17_1641150_1654866	0/0	c0025	1206	1	0	0	0	1	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0026	1206	1	0	1	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0027	1206	1	0	0	0	0	1	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0028	1206	1	1	0	0	0	0	copy fasta	RILP	chr17	1641150	1654866
RILP_chr17_1641150_1654866	0/0	c0029	1206	1	0	0	1	0	0	copy fasta	RILP	chr17	1641150	1654866
RIMBP2_chr12_130391133_130721299	1/0	c0001	4089	37	3	12	12	3	6	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0002	4089	27	7	9	5	3	3	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0003	4089	14	4	3	3	1	3	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0004	4089	10	3	3	3	0	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0005	4089	9	3	2	2	1	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0006	4089	9	2	4	2	0	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0007	4089	6	0	0	1	0	5	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/1	c0008	4089	6	1	3	0	1	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0009	4089	4	3	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0010	4089	4	4	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0011	4089	3	0	0	2	0	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0012	4089	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0013	4089	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0014	4089	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0015	4089	2	0	2	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0016	4089	2	1	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0017	4089	2	0	2	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0018	4089	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0019	4089	2	1	0	1	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0020	4089	2	2	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0021	4089	2	1	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0022	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0023	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0024	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0025	4089	1	0	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0026	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0027	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0028	4089	1	0	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0029	4089	1	0	1	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0030	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0031	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0032	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0033	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0034	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0035	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0036	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0037	4089	1	0	0	1	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0038	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0039	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0040	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0041	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0042	4089	1	0	0	1	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0043	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0044	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0045	4089	1	0	0	1	0	0	copy fasta	RIMBP2	chr12	130391133	130721299